An electrografted monolayer of polyaniline as a tuneable platform for a glucose biosensor.

Polyaniline (PANI), a nanostructured conducting polymer, has shown significant potential in optical and bioelectrochemical devices. However, its performance and stability on various substrates are hindered by weak adhesion to the surface. In this study, a strongly adherent polyaniline conducting polymer layer with a thickness of five nanometers was electrografted onto an initiating monolayer on gold and tin-doped indium oxide substrates. These electrografted monolayers consist of vertically oriented fully oxidized-protonated (pernigraniline salt) and deprotonated (pernigraniline base) forms of polyaniline. The monolayer exhibits pH-dependent colour changes and it is suitable for enzyme compatibility. In light of these findings, we have developed and characterized an electrochemical glucose biosensor based on the monolayer of polyaniline on a gold electrode. The biosensor utilizes glucose oxidase as the biorecognition element for the selective detection of glucose concentrations in real blood plasma samples.

The Crystal Structure of Engineered Nitroreductase NTR 2.0 and Impact of F70A and F108Y Substitutions on Substrate Specificity.

Bacterial nitroreductase enzymes that convert prodrugs to cytotoxins are valuable tools for creating transgenic targeted ablation models to study cellular function and cell-specific regeneration paradigms. We recently engineered a nitroreductase ("NTR 2.0") for substantially enhanced reduction of the prodrug metronidazole, which permits faster cell ablation kinetics, cleaner interrogations of cell function, ablation of previously recalcitrant cell types, and extended ablation paradigms useful for modelling chronic diseases. To provide insight into the enhanced enzymatic mechanism of NTR 2.0, we have solved the X-ray crystal structure at 1.85 Angstroms resolution and compared it to the parental enzyme, NfsB from Vibrio vulnificus. We additionally present a survey of reductive activity with eight alternative nitroaromatic substrates, to provide access to alternative ablation prodrugs, and explore applications such as remediation of dinitrotoluene pollutants. The predicted binding modes of four key substrates were investigated using molecular modelling.

Understanding the activity of glucose oxidase after exposure to organic solvents.

Long-term stability of enzymes in organic solvents is one of the most challenging problems in modern biotechnology and chemical industries. However, the resistance of enzymes to organic solvents is not very well understood so far. Herein, the effects of apolar, chlorinated, and polar organic solvents on the activity and structure of glucose oxidase from Aspergillus niger were systemically investigated using spectrophotometric activity assay of this enzyme and absorption and chiroptical spectroscopy. Molecular dynamics simulations and correlation of the activity with properties of the organic solvents were employed to understand the effects of organic solvents on the enzyme. The experimental and theoretical results showed that apolar solvents reduce the enzyme activity because they facilitate its aggregation through inter-enzymatic salt bridges. Moreover, polar solvents strongly coordinate with amino acid residues in the glucose binding pocket and prevent binding of the substrates. We found that this enzyme is stable in pure apolar and chlorinated solvents and these solvents can be used for the functionalization of its residues. This work provides an in depth understanding at the molecular level of the impact of various pure organic solvents on the structure and dynamics of glucose oxidase and the regulation of its catalytic activity.

Functionalization of Glucose Oxidase in Organic Solvent: Towards Direct Electrical Communication across Enzyme-Electrode Interface.

Enzymatic biosensors based on glucose oxidase has been proven to be one of the effective strategies for the detection of glucose and contributed to health improvements. Therefore, research and debates to date are ongoing in an attempt to find the most effective way to detect this analyte using this enzyme as the recognition center. The 3rd generation biosensors using direct electron transfer (DET) type enzymes are a great way towards practical devices. In this work, we developed a simple method for the functionalization of glucose oxidase with redoxable ferrocene groups in chloroform. The enzyme retained its activity after storage in this organic solvent and after the functionalization procedures. This enzyme functionalization strategy was employed to develop the biosensing monolayer-based platforms for the detection of glucose utilizing the quasi-DET mechanism. As a result of an electrochemical regeneration of the catalytic center, the formation of harmful H2O2 is minimized during enzymatic electrocatalysis.

Electrochemistry and Spectroscopy-Based Biosensors.

During and after the COVID-19 pandemic, the development of low-cost detection and analysis methods of bioanalytes as well as infection biomarkers became an increasingly important challenge in order to improve public and personal health [...].

Poly(9H-carbazole) as a Organic Semiconductor for Enzymatic and Non-Enzymatic Glucose Sensors.

Organic semiconductors and conducting polymers are the most promising next-generation conducting materials for electrochemical biosensors as the greener and cheaper alternative for electrodes based on transition metals or their oxides. Therefore, polycarbazole as the organic semiconducting polymer was electrochemically synthesized and deposited on working electrode. Structure and semiconducting properties of polycarbazole have theoretically and experimentally been analyzed and proved. For these electrochemical systems, a maximal sensitivity of 14 µA·cm-2·mM-1, a wide linear range of detection up to 5 mM, and a minimal limit of detection of around 0.2 mM were achieved. Moreover, Michaelis's constant of these sensors depends not only on the enzyme but on the material of electrode and applied potential. The electrocatalytic mechanism and performance of the non- and enzymatic sensors based on this material as a conducting layer have been discussed by estimating pseudocapacitive and faradaic currents and by adding glucose as an analyte at the different applied potentials. In this work, the attention was focused on the electrochemical origin and mechanism involved in the non- and enzymatic oxidation and reduction of glucose.

Towards direct enzyme wiring: a theoretical investigation of charge carrier transfer mechanisms between glucose oxidase and organic semiconductors.

In this work, a general theoretical and numerical approach based on semiconductor theory, which could be applied to a study of direct enzyme wiring, has been discussed. Marcus-Hush theory was applied to evaluate the potential transfer of charge carriers (holes and electrons) between glucose oxidase (GOx) and organic semiconductors. Two mechanisms of multistep hopping of charge to/from the oxidised/reduced flavin-based moiety through residues of aromatic amino acids located in GOx and long range charge direct tunnelling from the cofactor to the organic semiconductor surface have been proposed and evaluated. It was determined that the hole-hopping mechanism is possible and proceeds at a low ionization potential of the organic semiconductor. The calculations reveal that hopping of electrons is blocked, but direct electron tunnelling between the cofactor and the organic semiconductor is still probable. The most optimal conditions and tunable characteristics of GOx-based biosensors such as the ionization potential, electron affinity of organic semiconductors and distance between the enzyme and surface were estimated for the first time.

Experimental and Theoretical Investigations of an Electrochromic Azobenzene and 3,4-Ethylenedioxythiophene-based Electrochemically Formed Polymeric Semiconductor.

An electrochromic material based on azobenzene and 3,4-ethylenedioxythiophene (EDOT) semiconducting layer was electrochemically deposited on an indium tin oxide coated glass electrode. Chemical synthesis of the azobenzene and EDOT-based chromophore (DAE) and electrochemical formation of its corresponding polymer (pDAE) are reported. The electrochromic properties of the synthesized polymer pDAE were investigated by electrochemical and spectroelectrochemical methods. pDAE exhibited an optical bandgap of 1.82 eV and three distinct colored states in its reduced, neutral, and oxidized forms. The pDAE polymer showed 44 % optical contrast at 710 nm between its reduced and oxidized states and a fast electrochromic switching time of 1.0 s. The frontier molecular orbitals, Raman shifts, and semiconducting properties of this electrochromic polymer were evaluated by density functional theory calculations. The optical absorption bands of the polymer charged states were assigned and investigated.

Interface engineering and solid-state organization for triindole-based p-type organic thin-film transistors.

Inspired by the excellent device performance of triindole-based semiconductors in electronic and optoelectronic devices, the relationship between the solid-state organization and the charge-transporting properties of an easily accessible series of triindole derivatives is reported herein. The vacuum-evaporated organic thin-film transistors (OTFTs) exhibited a non ideal behaviour with a double slope in the saturation curves. Moreover, the treatment of the gate insulator of the OTFT device with either a self-assembled monolayer (SAM) or a polymer controls the molecular growth and the film morphology of the semiconducting layer, as shown by X-ray diffraction (XRD) analyses, atomic force microscopy (AFM) and theoretical calculations. N-Trihexyltriindole exhibited the best device performance with hole mobilities up to 0.1 cm2 V-1 s-1 at the low VG range and up to 0.01 cm2 V-1 s-1 at high VG, as well as enhanced Ion/Ioff ratios of around 106. The results suggest that the non-ideal behaviour of the here studied OTFT devices could be related to the higher interfacial disorder in comparison to that in the bulk.

Aggregation-Enhanced Emission and Thermally Activated Delayed Fluorescence of Derivatives of 9-Phenyl-9H-Carbazole: Effects of Methoxy and tert-Butyl Substituents.

Derivatives of 9-phenyl-9H-carbazole were synthesized as efficient emitters exhibiting both thermally activated delayed fluorescence and aggregation-induced emission enhancement. Effects of methoxy and tert-butyl substituents at the different positions of carbazolyl groups on the properties of the emitters were studied. Depending on the substitutions, photoluminescence quantum yields (PLQY) of non-doped solid films of the compounds ranged from 17 % to 53 % which were much higher than those observed for the solutions in low-polarity solvent toluene. Compounds substituted at C-3 and C-6 positions of carbazole moiety by methoxy- and tert-butyl- groups showed the highest solid-state PLQY. Ionization potentials of the studied derivatives in solid-state were found to be in the short range of 5.75-5.89 eV. Well-balanced hole and electron mobilities were detected for tert-butyl-substituted compound. They exceeded 10-4  cm2 (V×s)-1 at electric fields higher than 3×105  V cm-1 . Two compounds with the highest solid-state PLQYs showed higher efficiencies in non-doped organic light-emitting diodes than in the doped devices. Maximum external quantum efficiency of 7.2 % and brightness of 15000 cd m-2 were observed for the best device.

Insights into a hole transfer mechanism between glucose oxidase and a p-type organic semiconductor.

This manuscript describes a bioelectrochemical application of a new class of electrochemically generated hole-transporting (p-type) polymeric semiconductors (HTPS), which are based on a carbazole core and the oxiran and thiiran reactive groups. Electrode based on transparent layer of indium tin oxide was electrochemically modified with a layer of HTPS and a monolayer of covalently immobilized glucose oxidase (GOx). The HTPS/GOx-based electrode was investigated for an evaluation of direct hole-transfer between the enzyme and electrode at a bio-electrochemically relevant potential via HTPS layer. The broad linear relationship between the peak-current density and glucose concentration from 2 to 15mM and high stability of ITO/poly-CzS/GOx-electrode was observed. Moreover, it was determined that charge transfer rate constants are reliable for the establishment of advanced electron transfer between enzyme and electrode for the application of this HTPS/GOx-based electrode in long-lived biofuel cells and amperometric biosensors.

Tuning the ambipolar charge transport properties of tricyanovinyl-substituted carbazole-based materials.

A series of push-pull carbazole-based compounds has been experimentally and theoretically characterized in combination with the X-ray analysis of the corresponding single crystals. The introduction of the strong electron-withdrawing tricyanovinyl group in the carbazole core affords electron-transporting ability in addition to the characteristic hole-transporting properties exhibited by donor carbazole derivatives.

N-Tosyl-1,5,2,6-dithiadiazocane: a waste-free electrophilic sulfur reagent for the efficient synthesis of medium-ring S,N-heterocycles.

We report on the application of an eight-membered C2-symmetric sulfenamide derivative as a new convenient and highly reactive electrophilic sulfur-nucleophilic nitrogen synthon for the concise synthesis of medium-ring S,N-heterocyclic systems.

Diastereoselective Strategies towards Thia[n]helicenes.

In the present study, we have investigated different strategies for diastereoselective synthesis of thia[n]helicenes. We describe the introduction of different chiral auxiliaries at various positions and investigated their effect in the photocyclization reaction. Different chiral groups were placed at the sterically hindered position of the helical core and their interactions with various solvents and metals like copper were investigated. The use of Cu(I) salts has led to high diastereoselectivity in the photocyclization process and we were successful in obtaining the thia[5]helicene in enantiomerically pure form in good yield. The single diastereomer obtained was characterized by X-ray crystallography. From the study of the barrier of racemization of these thia[5]helicenes, the stability was found to be comparable to unsubstituted tetrathia[7]helicenes and substituted diazadithia[7]helicenes. This approach provides an easy access to enantiopure helicenes.

Crystal structure of 1,3,6,8-tetra-bromo-9-ethyl-9H-carbazole.

In the title compound, C14H9Br4N, the tricyclic ring system is almost planar (r.m.s. deviation for the 13 non-H atoms = 0.017 Å) and the methyl C atom deviates from the mean plane of the ring system by 1.072 (17) Å. In the crystal, Br⋯Br contacts [3.636 (3) and 3.660 (3) Å] slightly shorter than the van der Waals contact distance of 3.70 Šare seen.

N-protected 1,2-oxazetidines as a source of electrophilic oxygen: straightforward access to benzomorpholines and related heterocycles by using a reactive tether.

A hitherto unknown reactivity of a strained four-membered heterocycle, 1,2-oxazetidine, is reported. When reacted with organometallic compounds, this reagent provides electrophilic oxygen with a nitrogen-terminated two-carbon-atom tether. The synthetic versatility of the products obtained was demonstrated in various transformations, leading to efficient synthesis of six-, seven-, and eight-membered heterocyclic systems of pharmaceutical importance.

Synthesis, functionalization, and optical properties of chiral carbazole-based diaza[6]helicenes.

In the present study, carbazole-based diaza[6]helicenes were synthesized utilizing versatile quinoline and 9-(2-ethylhexyl)-2,7-dimethoxycarbazole-3-carbaldehyde building blocks via the Wittig reaction-photocyclization strategy. The presence of bifunctional units comprising electrophilic chloroquinoline and electron-rich carbazole has opened up new opportunities. The chloro group was substituted with a chiral amine, allowing diastereomeric separation, and the chiral forms were monofunctionalized via electrophilic substitution on the carbazole unit. Postcyclization functionalization via substituting the carbazole unit provides a platform for the synthesis of chiral functionalized materials with potential application in fields such as asymmetric synthesis and organic electronics. The configuration of the diaza[6]helicene diastereomers was demonstrated by time-dependent density functional theory (TD-DFT) calculations. Furthermore, on the basis of the DFT calculations of the HOMO-LUMO energy levels of the chiral forms, these compounds can be potentially of interest as hole-transporting compounds.

Crystal structure of 3-bromo-9-ethyl-9H-carbazole.

In the title compound, C14H12BrN, the tricyclic ring system is essentially planar (r.m.s. deviation 0.026 Å). The carbon atoms of the ethyl group deviate from the mean plane by 0.148 (9) (CH2) and 1.59 (1) Š(CH3). In the crystal, H⋯π contacts [2.698-2.898 Å] shorter than the van der Waals contact distance of 3.70 Šare observed. A scalable to gram quantities selective synthesis of mono-bromine-substituted carbazole derivatives was developed.

Homoconjugation vs. exciton coupling in chiral α,ß-unsaturated bicyclo[3.3.1]nonane dinitrile and carboxylic acids.

The chiroptical properties of enantiomerically pure bicyclo[3.3.1]nona-2,6-diene-2,6-dicarbonitrile and related acids were studied by circular dichroism spectroscopy and theoretical computations. A consideration of the molecular structure of the synthesized difunctional compounds revealed that chromophores are predisposed to transannular through-space interaction due to a favourable conformation of the bicyclic skeleton and a rather small interchromophoric distance. Evidence for non-exciton-type coupling between the two acrylonitrile and acrylate moieties in 3 and 4, respectively, was obtained by chiroptical spectroscopy and DFT calculations.

A study of planar chromophores in dichromophoric molecules by circular dichroism spectroscopy.

A synthesis of a series of enantiomerically pure polycyclic structures derived from (+)-(1S,5S)-bicyclo[3.3.1]nonane-2,6-dione was accomplished. Molecules containing single or two similar or different chromophores were obtained. Chiroptical properties of the synthesized chiral structures 2-5, and 7 having carbonyl, 1,2-methylenedioxybenzene, and indole chromophores were studied. The sign of the cotton effect was related to sector rules and the orientation of the planes containing chromophores in dichromophoric molecules possessing 1,2-methylenedioxybenzene and carbonyl or indole chromophores. Interaction of the chromophores in dichromophoric molecules was examined by CD spectroscopy; however, no direct evidence was obtained.